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    Robarts Research Institute

    Next-Generation Sequencing Resources

    Recommended Depth Alignment Visualization software
    Alignment algorithms Genome Analysis Tool Kit
    Aligner Comparison FastQC
    Galaxy SFF Tools
    BioEdit IGV
    SeqAnswers PRINSEQ
    Mothur (Microbial ecology) R Power Analysis
    Illumina Coverage Calculator

    Online Data Analysis Tools

    Sample Size Calculation NetAffx
    CyberT (Stat program) MyGene.info
    Venny 2.1
    AmpliCancer - variant discovery tool GenePattern
    miRMaster
    miR2Disease miRWalk 2.0

    Ontology and Pathway Tools

    Onto Express WikiPathways
    Gostat GoToolBox
    Panther Pathway Express
    KEGG DAVID
    BiNGO Enrichr
    Nexontology GeneMania
    String Reactome
    GO-Elite Pathway Analysis PathVisio
    AltAnalyze GeneAssist Pathway Atlas

     

    Academic Data Analysis Software

    STEM Agilent Technologies Bioanalyzer Expert Software
    BioConductor SAM
    MAT (Model based Analysis of Tiling arrays) The Comprehensive R Archive Network
    ComBat BRB ArrayTools
    RMAExpress Microarray Sample Size Determination
    CisGenome MatchMiner
    Q-value TAC
    Hierarchical Clustering Explorer CRLMM (SNP genotyping algorithm)
    Chipster The Bio-Analytic Resource for Plant Biology
    iArray Analyzer CNAG
    Expander GSEA

     

    qPCR Resources

    New to Real-Time PCR? Start here! Tools
    Tutorials & Guides Troubleshooting
    qPCR Handbook Data Assist

     

    London Regional Core Facilities

    London Regional Proteomics Centre Translational Research Centre
    London Transgenic Facility  

     

    Affymetrix Library Files


    Robart's Research Institute

    University of Western Ontario

    Site designed by Ericka Simon

    Maintained by David Carter

    Last update: Friday, January 11, 2019