Affymetrix Fluidic Station

 

 

 

 

 

RECOMMENDED READING

Recommended Coverage and Read Depth Illumina Coverage Calculator
RNA-seq data analysis: Best Practices Aligner Comparison
Guide to Analysis of RNA-seq Data Alignment Visualization software
SeqAnswers Mothur (Microbial ecology)
NEB rRNA Depletion Ribo-off rRNA Depletion (bacteria)
riboPOOL Ribo Minus
Gene Fusion Detection Alignment algorithms

NGS TOOLS

FastQC PRINSEQ
Galaxy IGV
R Power Analysis Venny 2.1  

DNA / miRNA / circRNA

Franklin (variant classification) AmpliCancer - variant discovery tool
SNPnexus Genome Analysis Tool Kit (GATK)
miRWalk 2.0 miRMaster
circBase Circular RNA Interactome
Gemini (variant annotation) VarAFT

BIOLOGICAL INTERPRETATION

Enrichr Reactome
g:Profiler Metascape
String Cytoscape
Interferome GSEA
GeneMania DAVID
Panther AltAnalyze
CiiDER GOrilla

MICROARRAY RESOURCES

TAC NetAffx
Affymetrix Library Files BioConductor
ComBat CNAG
BRB ArrayTools CisGenome
Expander Hierarchical Clustering Explorer
The Bio-Analytic Resource for Plant Biology GenePattern
 

qPCR RESOURCES

qPCR Handbook

LONDON REGIONAL CORE FACILITIES

Robarts Research DNA Sequencing Facility  
London Regional Proteomics Centre

London Transgenic Facility

Translational Research Centre

 

 

 

 

 

 

 


Robart's Research Institute


Site designed by Ericka Simon

Maintained by David Carter
Last update: Monday, March 29, 2021